rs49220495 SNP Detail

Summary

• ID
  rs49220495
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136721125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGA GGCGTGCTAT CCAGCCTAGT
  G
  GAATAGGTAA GCTCTGTCCA GTAAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144517175	ENSMUSSNP7107981	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs49220495					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136721125 () rs orientation: forward

Symbol	Name	Function Class
Gm71524	predicted gene, 71524	729 bp downstream
Myl10	myosin, light chain 10, regulatory	875 bp upstream
Rr127468	regulatory region 127468	125 bp distal
Rr127469	regulatory region 127469	676 bp proximal
Tssr49256	transcription start site region 49256	742 bp downstream
Tssr49257	transcription start site region 49257	549 bp upstream
Tssr49258	transcription start site region 49258	685 bp upstream
Tssr49259	transcription start site region 49259	748 bp upstream
Tssr49260	transcription start site region 49260	813 bp upstream
Tssr49261	transcription start site region 49261	1325 bp upstream
Tssr49262	transcription start site region 49262	1343 bp upstream
Tssr49263	transcription start site region 49263	1386 bp upstream
Tssr49264	transcription start site region 49264	1396 bp upstream
Tssr49265	transcription start site region 49265	1850 bp upstream
Tssr49266	transcription start site region 49266	1872 bp upstream
Tssr49267	transcription start site region 49267	1942 bp upstream