rs49221160 SNP Detail

Summary

• ID
  rs49221160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTAAGGC TTCCCGATGA
  AGAAGAGCTG GGGTTTCCAG TGAGAGGCTT GAAATTCAGG TGTAGGCTCT CGCTCTTATC
  CTGACTGAGT TCAGTGAAAA AGCAATAGGT ATTGTTCTTG TTTACAACGT ACGCGAAGTC
  ATGCCTTGAC ATTTTTACTC TTAACATCAT TTGGAAAGGT TCAAGCTGGT ACAATTGTAA
  Y
  GCCAGCTCTA CTATTCTAGT TTCAAAGCGC CCAGAGTGTT TATTGCTGGA AAGTCCAGCA
  ATAGGTAGCA GGTCCCTTGT GGAGGCTAGA GATGGTTTCG TTTGGAGAGT AAACCAAGGT
  CCAGGATGAA GTCAAAAGAA GGGGGCTCTG CAACCCGCCT TTAAGATACC CACTAACAGC
  AACCATTTTC TCATCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198257	NES16702735	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49221160					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198257	NES16702735	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052848 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1785 bp upstream
Rr614420	regulatory region 614420	1796 bp distal
Rr614421	regulatory region 614421	1927 bp distal
Rr614422	regulatory region 614422	1106 bp distal
Tssr47224	transcription start site region 47224	1280 bp downstream
Tssr47225	transcription start site region 47225	1178 bp downstream
Tssr47226	transcription start site region 47226	1109 bp downstream
Tssr47227	transcription start site region 47227	915 bp downstream
Tssr47228	transcription start site region 47228	852 bp downstream
Tssr47229	transcription start site region 47229	831 bp downstream
Tssr47230	transcription start site region 47230	806 bp downstream
Tssr47231	transcription start site region 47231	776 bp downstream
Tssr47232	transcription start site region 47232	629 bp downstream
Tssr47233	transcription start site region 47233	579 bp downstream
Tssr47234	transcription start site region 47234	544 bp downstream
Tssr47235	transcription start site region 47235	199 bp upstream
Tssr47236	transcription start site region 47236	219 bp upstream
Tssr47237	transcription start site region 47237	268 bp upstream
Tssr47238	transcription start site region 47238	274 bp upstream
Tssr47239	transcription start site region 47239	334 bp upstream
Tssr47240	transcription start site region 47240	346 bp upstream
Tssr47241	transcription start site region 47241	361 bp upstream
Tssr47242	transcription start site region 47242	398 bp upstream
Tssr47243	transcription start site region 47243	421 bp upstream
Tssr47244	transcription start site region 47244	455 bp upstream
Tssr47245	transcription start site region 47245	475 bp upstream
Tssr47246	transcription start site region 47246	526 bp upstream
Tssr47247	transcription start site region 47247	570 bp upstream
Tssr47248	transcription start site region 47248	633 bp upstream
Tssr47249	transcription start site region 47249	703 bp upstream
Tssr47250	transcription start site region 47250	841 bp upstream
Tssr47251	transcription start site region 47251	905 bp upstream
Tssr47252	transcription start site region 47252	957 bp upstream
Tssr51810	transcription start site region 51810	1846 bp upstream
Tssr51811	transcription start site region 51811	1792 bp upstream
Tssr51812	transcription start site region 51812	762 bp upstream
Tssr51813	transcription start site region 51813	745 bp upstream
Tssr51814	transcription start site region 51814	218 bp downstream
Tssr51815	transcription start site region 51815	252 bp downstream
Tssr51816	transcription start site region 51816	286 bp downstream