rs49222127 SNP Detail

Summary

• ID
  rs49222127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88483046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACCACT CCCCCAAGAG
  GATTTTCTGC AGTTCTGTCC CAGAGAGCTG AGTTCCCTCA AAGTCCCACA CCAGTCACCA
  CACATGGGGG ACAAAGAAGC AGGTGAACAG ATATTTCCGA TTTCACAACT CAGACACTCA
  AACACTTGCC TGATGGCTTC CAGCAGACAT CAGGGAGATC AAGGTGTGTG AGGAGGGTCT
  R
  GAAAGGAGAA AGCTCAGAAG GTTCCCAGCA GTGGGAAACA GAACGGACAG AAGGCTGGGG
  GCTGGCATGG CGGGGGACTC CAATGGTGTG CATGTATGCG ACTATAACAT GTATGTTCAC
  AGAGGCTTCG ACACCCCACA AATTCCGCTG CCCGAAGCAA GGCCACCCCA TATTGCAAAG
  CGACCTGCTG AGGGGGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63579271	NES17028541	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49222127					SNP	G	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63579271	NES17028541	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88483046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7510	CpG island 7510	1744 bp proximal
Gm62180	predicted gene, 62180	within coordinates
Tssr132609	transcription start site region 132609	1437 bp upstream
Tssr135809	transcription start site region 135809	1363 bp downstream
Zdhhc25	zinc finger, DHHC domain containing 25	1459 bp upstream