rs49222700 SNP Detail

Summary

• ID
  rs49222700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60059247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTATTAAG AAGTCTATTG CAATGGGAAG AGGGGAGAAT
  CATCCCACAA AGATTCTTAA AGCTTAAATC ACAAATGTTT CATGGAAAGG ATGGGCGAGC
  R
  AAATTTTATA CATACACAGC CTCTTGCTTG GTCTTTTAAA GAAGTAGGGA AGTGAGAGGT
  GGAGGTGAGG GTGTTACTAA AGCACAGGAA ATACCACTAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52559994	NES15632520	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49222700					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52559994	NES15632520	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60059247 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	within coordinates
Tssr4605	transcription start site region 4605	189 bp upstream
Tssr134460	transcription start site region 134460	501 bp upstream
Tssr134461	transcription start site region 134461	367 bp upstream
Tssr134462	transcription start site region 134462	265 bp upstream
Tssr134463	transcription start site region 134463	215 bp upstream
Tssr134464	transcription start site region 134464	115 bp upstream
Tssr134465	transcription start site region 134465	67 bp upstream
Tssr134466	transcription start site region 134466	58 bp upstream
Tssr134467	transcription start site region 134467	15 bp upstream
Tssr134468	transcription start site region 134468	within coordinates
Tssr134469	transcription start site region 134469	31 bp downstream