rs49223952 SNP Detail

Summary

• ID
  rs49223952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75563824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGATCGTC ATCTCTCCGG
  CCATCAGTCC CGCCGAACAG GCAGAAGGAT GACTGTACCG ATGGGAGGCA CCGCCCCCTA
  GTCGCCGGCT GTCGCGCAGC CTCCTGGGAA ATGTAGTCCG TCGGCTCCGA ATTAGCCGGA
  GGAACTACGA TTTCCACCAC AGCAATGACT CCATCTACCA TGAGGCCGCG GGGCGGATTT
  Y
  ACTCAGGCCA GTGAGGGAAG ACTCGGCCTC CCCACGCACG AAGGCCCAAC AAACCAGGCT
  TTGTTGTGGG AGCAGCGTCT GGGAAAGGCC AGAGTTTGTC ATTCATCAAA CCCAAAACGC
  TGCGAGCTTA CTCGCGGTTA AAAAAAAAAA AAAAAAAAAA AAAAAAAAGT CCCTGTAGCC
  CCGCCTCACC GCGTTGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60495640	NES16525081	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49223952					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60495640	NES16525081	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75563824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	within coordinates
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr319131	regulatory region 319131	1624 bp distal
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	78 bp upstream
Rr404917	regulatory region 404917	976 bp upstream
Tssr141799	transcription start site region 141799	139 bp upstream
Tssr141800	transcription start site region 141800	137 bp downstream