rs49224510 SNP Detail

Summary

• ID
  rs49224510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:20417755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGAATC CAGAAGTTTG
  TACATACCAC TAATTCCATT CCCAGACTAA ACGTAGCTTA AAAAAAAAAA AGTGATTTTG
  TCTGTGTGGG AAGTACTGGT CCTATGGCAC ATATGTTGAA GTCGGAGGAC AACTAGCAGG
  AGTTTACTCT TTTCACCATG TGTAGAAGTC AGAGGACAAC TTTTAGGAGT CTTTCTTCCA
  Y
  TATGAATTTT GAGGAAGGAA CTCTGGTCAT CTGTTTTCTT TATAAGGCAA GTACTTGCTA
  TGTAGTTACC AAGGTTGATG TAGAACTCAC AGATTCTTGC TTCCACTTCT CAAATGCTAC
  TAGGAGCAGC ATCTAATTTA CCTATCAATG TGTTTATAGC TCCAAAGAAA ATGTTTAGCC
  TCTTCCTTCC CTGGTCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134095071	ENSMUSSNP6617080	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49224510					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20417755 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	Intron
Tssr160646	transcription start site region 160646	1799 bp downstream
Tssr160647	transcription start site region 160647	1720 bp downstream
Tssr160648	transcription start site region 160648	807 bp upstream