rs49225370 SNP Detail

Summary

• ID
  rs49225370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90787443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCAAAGT GCTCGTTGCC
  ATGGCAACTG CAGCATCAAA CAGGGCCGCC CTGTGGGTGC GGCTGCAAAA CCAAGAGCCC
  TGGCGCTGAG ACCAATGAGG TGGCTCCTTC TGGCCCTCAC TGGAAACCTG GAAATCTGTT
  GCTAAAATGC ACTCGCAGCC CGAAGAATGT AATGATGGCA TTGCTTTCCA GGGCAGCTTT
  Y
  CCGTCCCTGG CATGGAAACA TAGGAGCCAC TAAACTAAGA ACTCAGGAGA TCTTGTGTCC
  TGGAGTTAGG GGCCATGAGA CTTCAGCAAG CAGAGTGTCT CCTGGGAATT TCAGATGTGA
  TACTGTAAAA TGGGATCATG ACAGTTGTGT AACTGGTTCA GGAGGGCTGA CCACATACAG
  TAACTGACAT AGCTTGTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908473	NES15947975	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49225370					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908473	NES15947975	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90787443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17728	CpG island 17728	105 bp distal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr634330	regulatory region 634330	349 bp distal
Rr634331	regulatory region 634331	within coordinates
Rr634332	regulatory region 634332	229 bp distal
Rr634333	regulatory region 634333	1760 bp proximal
Tssr62052	transcription start site region 62052	388 bp upstream
Tssr62053	transcription start site region 62053	367 bp upstream
Tssr62054	transcription start site region 62054	301 bp upstream
Tssr62055	transcription start site region 62055	242 bp upstream