rs49225435 SNP Detail

Summary

• ID
  rs49225435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:109738529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGATGGG AAAGGGCAGA
  TGCTGCTGAG GTAAAGGGCC TCCAGACTCA CTGAGGAGTT TCTGAAAGAC ACTATGACTC
  TTATCTCAGT GTCATATATT GTTCAGCATA TAGACTACAG CAAGCAAGCC TTCGGAGCTG
  TTTCCAACAG AGGCACAATC TCATATGCGT ACACTGACCG TCCTGAAGAA CACCCAAAAC
  R
  CTATGCTTAT ATTTGAAAAA TGCACAAGGT AAGTGCTATT CCAAAAATAG TTGCCCCAGC
  AAACTCTATT GCTTAAAACT TGCAATTAAG TTTACTGACA GAAAGCCCAG TGTACAGAAT
  TACATACTAT AGGAACAGCA GAACAAACAG GAGAAGAAGA GAAAAACTAG GTCAGAGGTC
  AGAAAACACA CCTACAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323458388	CHEV_10_109339724	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49225435					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:109738529 () rs orientation: forward

Symbol	Name	Function Class
Nav3	neuron navigator 3	within coordinates
Rr224236	regulatory region 224236	1071 bp proximal
Tssr99236	transcription start site region 99236	1146 bp downstream
Tssr99237	transcription start site region 99237	1162 bp downstream
Tssr99238	transcription start site region 99238	1184 bp downstream
Tssr99239	transcription start site region 99239	1207 bp downstream
Tssr99240	transcription start site region 99240	1243 bp downstream
Tssr99241	transcription start site region 99241	1284 bp downstream
Tssr99242	transcription start site region 99242	1344 bp downstream