rs49226468 SNP Detail

Summary

• ID
  rs49226468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC TGAGGAGTGG TGAGGTAAAC
  Y
  GCTCTTGGGA CTGAAATAGC TCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133014963	ENSMUSSNP5422579	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321754659	CHEV_6_17412774	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49226468					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	541 bp proximal
Met	met proto-oncogene	1026 bp upstream
Rr626799	regulatory region 626799	536 bp proximal
Rr626800	regulatory region 626800	700 bp proximal
Rr626801	regulatory region 626801	743 bp proximal
Rr626802	regulatory region 626802	1275 bp proximal
Tssr55050	transcription start site region 55050	658 bp upstream
Tssr55051	transcription start site region 55051	781 bp upstream
Tssr55052	transcription start site region 55052	975 bp upstream
Tssr55053	transcription start site region 55053	1052 bp upstream
Tssr55054	transcription start site region 55054	1111 bp upstream
Tssr55055	transcription start site region 55055	1127 bp upstream
Tssr55056	transcription start site region 55056	1153 bp upstream
Tssr55057	transcription start site region 55057	1318 bp upstream
Tssr55058	transcription start site region 55058	1358 bp upstream
Tssr55059	transcription start site region 55059	1397 bp upstream