rs49227208 SNP Detail

Summary

• ID
  rs49227208
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123269766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACAGAT CCTCCAAAGC
  GAGTTCCTCA GTTAACTTCT GAATGGAGGT TGCCTTGGGA ACAGGGAGGC CTACTCCCCA
  GCCACAGTGG CTCTTTCTCA AGGCAGCAGC CAACAGATAG ATGACCTGGC GAGTCCTTCC
  CCTCTGTACA TTAGGGGACA GGAGTAGGAG GAAGTCTGAT CTTTGATATC CATGTTGGTC
  G
  CAAGCATCCA GAAAATGAGG GAGTTACTGG GATGTCTTAT AACAGGCCCT AGATAAGTTT
  CACTCCTTCA GTAAGCCATA TTTGTACTCT TGCTGGCTAT TTCAAAGCAC TTTAAAAATA
  AGATTGATTT CTGTTTTAAA ATGAACATTT AATAGCATGC TAGTTTCTAT TATAAATGCT
  ACTATTGCCC TCTATTGGTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss137077309	ENSMUSSNP2546585	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49227208					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123269766 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	within coordinates
Rr203065	regulatory region 203065	126 bp proximal
Rr208064	regulatory region 208064	within coordinates