rs49227342 SNP Detail

Summary

• ID
  rs49227342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114227215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA GAGGCCAAAG GGTGCGAAAT
  Y
  AGTAAGATAA GTCACATGGG AAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145296637	ENSMUSSNP714537	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49227342					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114227215 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Gm61348	predicted gene, 61348	1244 bp downstream
Rr282443	regulatory region 282443	16 bp distal
Rr282444	regulatory region 282444	586 bp proximal