rs49228113 SNP Detail

Summary

• ID
  rs49228113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66137030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGCACAA GAAAAACCAT
  CACACTGAAC GTAGCCACAT ATAAGGCTTC CTCCTGATTT CAGCGGAAGT ACAGTTCTCA
  TCTACTGGAG AAATATGCTC TTTGGTCCTC TCTGAGGCAT GAAAGTAACA AACATCCATA
  GCTGTGCATC CCTGGACTTG TGGGGGTCAT CGCCCTGGGT GCTCTGGGAC CTTAATTCCA
  Y
  ATCCTCTCCC TCTTCTAATC TCTAGAAACC ATAGCTCAGA TTTGCACAGT AGCCTTCGAC
  TATTACGCAA ACAGAAAGTT AATAAGAGCT GACAAAGACT GAGTCCTTAT GGTGTGACAG
  AAGCTCACCA AGCCTTTGAT AGCTAACATG CTGTTAGCAC TGTCATTTTA GAATGAAGAA
  ATGAACGTGC AAAGCAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63157196	NES17452152	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49228113					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63157196	NES17452152	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66137030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	1029 bp distal
Lman1	lectin, mannose-binding, 1	1324 bp upstream
Rr353056	regulatory region 353056	829 bp distal
Rr355117	regulatory region 355117	within coordinates
Rr405704	regulatory region 405704	1111 bp downstream
Tssr153727	transcription start site region 153727	1322 bp upstream