rs49228217 SNP Detail

Summary

• ID
  rs49228217
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134101689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAT GTGCAGAGTG AGATGGGCCC
  C
  CTCCTCTACC CCTGTTGTTA GAGAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147527558	ENSMUSSNP6640100	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321347241	CHEV_4_133930293	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49228217					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134101689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Extl1	exostosin-like glycosyltransferase 1			Intron
				Noncoding-Transcript-Variant
Rr601652	regulatory region 601652			1495 bp distal
Rr601653	regulatory region 601653			166 bp distal
Tssr43896	transcription start site region 43896			1817 bp upstream
Tssr43897	transcription start site region 43897			1789 bp upstream