rs49228921 SNP Detail

Summary

• ID
  rs49228921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57882179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTGTTT ATTAGCACAC
  AGGATTTTGC TGTTTCCCTC TTTGAAAGAT GAATTTATCT AAAATTTGAG ACTTCCAGTC
  ATTCAGTTTA TTAGACTTGA GACTTGCACT TTTTAAATTT CTTAGGGATC CATTTAAAAT
  GTGAAATTTC ATTTGCTAGA ATGCCTTTAT TTTATTTATA ATTTCTCTGA ACTATCTTAT
  R
  ATACTCCTTT ATTTATACTG AAACAATGAA AGTGACCTTT CTTTCAGTCT TTTCTGCATG
  AGAGTTTTAA GTGTTTCTCT TAAGTGGTAT TAGGGGCTAC AATGAGCCAA CACCTCACCA
  GAATTGAAAA TTTATAAATA GAACTTATAC TCTCTTTCCC TTCTCCTTCC TTTTTGAGCT
  GGTTTCACAG ACTCTAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss61167719	NES16674389	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs49228921					SNP	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61167719	NES16674389	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57882179 () rs orientation: forward

Symbol	Name	Function Class
Gm42635	predicted gene 42635	within coordinates
Pcdh7	protocadherin 7	within coordinates
Rr125227	regulatory region 125227	1378 bp distal
Rr125228	regulatory region 125228	178 bp distal
Rr125229	regulatory region 125229	21 bp proximal
Rr125230	regulatory region 125230	1021 bp proximal