rs49229552 SNP Detail

Summary

• ID
  rs49229552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62022776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTGTCT ATGCTGAATG
  TTTAGGTCTG GCCTCTGGTG TGTTCATGGT CATGGTGTTC TTTTTAAAGC CCCGCCTCCA
  CCCTTCCTCA TATGGAACAC AAGCTTCCCT GGTGAGGGGA ATTCCCTAAC CCAGGCTTAG
  CTGGGTCTGA GATTCTTGTT TTATATCTAT TGCCCTGTCT AAAACTCTCA CAGAAAAACC
  Y
  AGAAACCCAG GTAGGGTTGG GGTGACACTT GGACCGACTG CTCCTGCAAG GCCGGATGTC
  TCCAGCAGGG GGCGGCAAGC ACCAAGCTTT GTTTGGCATG GGTCCCTACA GAGCCCTACC
  TCGGTTACTT TCTATAACAC GGGTAGACTT GTGATACCAT TCTCCTACAG GAGCCCTGGA
  CTCAGCTACT TCTCCATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147125544	ENSMUSSNP17067	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49229552					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62022776 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	within coordinates
Rr219987	regulatory region 219987	625 bp proximal
Rr228220	regulatory region 228220	within coordinates
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	489 bp downstream