rs49230155 SNP Detail

Summary

• ID
  rs49230155
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCCGAAGC ACCAAGACAG ACCATCTCGA CCTAGAATTA
  TCTTGCTGGG AACCACCAGT TTCCAGGGGT CACTAGTTAC TCTTGAGACC TTCTGTCTCC
  Y
  GTGTCCTTTC ACTGTACACT CCCATCCTCT GCTCCCTTTG AATTAGAGCA CAGAAAATGG
  GGAGGGGCCA GAGAGCAGGG CTGAGTTTTA AAGTATGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135748516	ENSMUSSNP4225940	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320914175	CHEV_3_122434075	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49230155					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	222 bp distal
Pde5a	phosphodiesterase 5A, cGMP-specific	Intron
Rr584394	regulatory region 584394	1577 bp distal
Rr584395	regulatory region 584395	within coordinates
Rr584396	regulatory region 584396	674 bp distal
Tssr31512	transcription start site region 31512	1975 bp downstream
Tssr31513	transcription start site region 31513	1924 bp downstream
Tssr31514	transcription start site region 31514	1422 bp downstream
Tssr31515	transcription start site region 31515	1288 bp downstream
Tssr31516	transcription start site region 31516	1263 bp downstream
Tssr31517	transcription start site region 31517	1228 bp downstream
Tssr31518	transcription start site region 31518	1100 bp downstream
Tssr31519	transcription start site region 31519	1038 bp downstream
Tssr31520	transcription start site region 31520	1004 bp downstream
Tssr31521	transcription start site region 31521	918 bp downstream
Tssr31522	transcription start site region 31522	896 bp downstream