rs49230598 SNP Detail

Summary

• ID
  rs49230598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108533077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCATAG CACAGTCAAA
  TAGTAATAAT AATTTACTGT GTATCGAAGC ACTTTCTAAC CTAATGTAGG ATTTAGTCCT
  TTTCTCTCCC CCAAAGAGAA TGCAACCCTT TGCTATTTAG TTCACTTATA TACCCTAGCA
  TATAAGAGAG AGTCTGGTGC ATATTAAGCA TTTAAATTGT TGAATGAATA TGCCTCCCTA
  R
  TGATGCCTTA TGAAGCCATC ACAAATAAAG CACTATTGGT CAGGCATGAT GATTCCTGCC
  TATAGTCCTA GCATTCGGGA AGCAGAGGCA GGAAAGTTGA GGTAAGTTCC AGGCCAACCT
  AACCTATATG GCTAGGCGTG GAATGCAAAG TAGATCCTGA GTCCAAATTT TAATTCATTG
  ATTAATAAGT TAAATGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145637764	ENSMUSSNP1717392	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322388628	CHEV_7_116077384	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49230598					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108533077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	396 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	936 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	545 bp upstream
Rr400539	regulatory region 400539	287 bp upstream
Rr652951	regulatory region 652951	1167 bp distal
Rr652952	regulatory region 652952	57 bp proximal
Rr652953	regulatory region 652953	277 bp proximal
Tssr68456	transcription start site region 68456	535 bp upstream
Tssr68457	transcription start site region 68457	647 bp upstream