rs49231458 SNP Detail

Summary

• ID
  rs49231458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26757255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATATTG GAAGCAGTGC
  TCCTTTAGCT AAATTCTGGT TTGGGTAATT TATTATTTCC TAAGCAAATT AGTAAATCCC
  TTATACTTAC GCCAGTACAA AGTCTTTAAG ATACACAGTT TCCAACACTT ACTTCCTGGT
  TGTACTCACT TCCTCAATCC AGGCTAAAAG GCTACGTCAT CCCGTCATCC TCTCTGCTGA
  Y
  GTCACCACTT GCCCCACCCT GCCCCTCCCA TCCACATCAC TGACTCCTAA TCCAAGTTCA
  GCTTTAGGTG AGAAGAGCCA GGGAGCCACA CTTTCTCTCC CCCAGGCTGC TTCTTTGGCT
  TTTGGCCTTT TCCTGTCCTA TTTCAGACCC TCTGGCTCAC TCCCACAGAA GCTAAGCAAA
  CGAACTGGAA TCAGTGGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60554799	NES16569683	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49231458					SNP	C	C	C	C	C	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554799	NES16569683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26757255 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	1917 bp downstream
Gm50275	predicted gene, 50275	41 bp upstream
Rr405114	regulatory region 405114	within coordinates
Tssr143246	transcription start site region 143246	49 bp upstream