rs49231753 SNP Detail

Summary

• ID
  rs49231753
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70213644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAGCTAAG TCTCACGCCC ACCCAATTTT AGTGGAAAAA
  AAAAGCGCAG CAGGCAGTGA TGACAGCAGT AGAAAGGCTT TGGGTGGGGC GCGCTTTTCC
  K
  TGGAAGTGAG CTTAGCATCT TGGCAAGGAC CAAAGAGTTT TGTTGTTGTT TTTGTTGAGG
  ACAGGTGCAG TAGAGGTGTT CATTGTTCAA ACTGGAGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132369488	ENSMUSSNP3801789	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss323735030	CHEV_11_70136320	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49231753					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70213644 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	190 bp upstream
Cpgi3180	CpG island 3180	395 bp distal
Rr450275	regulatory region 450275	966 bp distal
Tssr108941	transcription start site region 108941	342 bp upstream
Tssr108942	transcription start site region 108942	304 bp upstream
Tssr108943	transcription start site region 108943	281 bp upstream