rs49232745 SNP Detail

Summary

• ID
  rs49232745
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGCTCT GCATTCTCTC
  TCTCCAGCTG CCTCACCTTC TCCATATAGG AGGCCAGGCG GTCATTCAGG AACTGCATGG
  TCTCCTTCTC ATTGCCATTG AAGGAGCCCT CACAGAACCA ATTGCAGTTG CCCACATTGG
  CGGGGATGTT GCAGGCCCCA GGCAGGGTGC AGCCATGGCA GCTGGGGGGC ACACAGGGCC
  K
  GGAGGAGCAG CTGGTGCGGC AGCTCAGGGC CGGCAGGCAG CAATTGTATG GCATGGTGCT
  GGAGGGAGGG AGAGAGGTAC CTGGCTGAAG ACTCGGTGTG AATTCTCCAA GCCTCAGAGC
  TCTGAGTCTC CTTCCCTTGG TGAGACTTTA TAAGCCTTCT ACAGAGGGTG TGGACACAGT
  ATGTAACATC TTTTTTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss132717782	ENSMUSSNP944469	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49232745					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941254 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	449 bp proximal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	295 bp proximal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	231 bp proximal
Gm11571	predicted gene 11571	1858 bp upstream
Krt31	keratin 31	within coordinates
Tssr104894	transcription start site region 104894	1676 bp upstream
Tssr104895	transcription start site region 104895	1832 bp upstream
Tssr104896	transcription start site region 104896	1853 bp upstream
Tssr110726	transcription start site region 110726	114 bp downstream