rs49232919 SNP Detail

Summary

• ID
  rs49232919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:81014426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCATAGGGC CTGGTACACT GGACACACTT GGAGATTTAG
  CGCCTGGGCA TCCATACCGT GTACCTTGGA GAGTGCTTGT GTACATTTCA CAGACAAAAC
  R
  TACGTGGTCT TCAGGCCTTG AACTGTCAGT GGTTTAGAGT ACTTGAGAGT TAAGGGTAAA
  CACTTAGTCC TTTTCACCCT GTCCTCAGGC GTGTGTGTGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388490	NES15267092	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49232919					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388490	NES15267092	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81014426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	416 bp distal
Eef2	eukaryotic translation elongation factor 2	Intron
Gm67815	predicted gene, 67815	1523 bp upstream
Rr402079	regulatory region 402079	1912 bp downstream
Rr435542	regulatory region 435542	1951 bp distal
Rr435543	regulatory region 435543	1534 bp distal
Rr435544	regulatory region 435544	1033 bp distal
Rr435545	regulatory region 435545	1083 bp proximal
Rr435546	regulatory region 435546	1575 bp proximal
Snord37	small nucleolar RNA, C/D box 37	369 bp upstream
Tssr94695	transcription start site region 94695	1944 bp downstream
Tssr94696	transcription start site region 94696	855 bp downstream
Tssr94697	transcription start site region 94697	755 bp downstream
Tssr94698	transcription start site region 94698	504 bp downstream
Tssr94699	transcription start site region 94699	558 bp upstream
Tssr94700	transcription start site region 94700	742 bp upstream
Tssr94701	transcription start site region 94701	802 bp upstream
Tssr94702	transcription start site region 94702	979 bp upstream
Tssr94703	transcription start site region 94703	1042 bp upstream
Tssr94704	transcription start site region 94704	1061 bp upstream
Tssr94705	transcription start site region 94705	1089 bp upstream
Tssr94706	transcription start site region 94706	1281 bp upstream
Tssr94707	transcription start site region 94707	1331 bp upstream
Tssr94708	transcription start site region 94708	1396 bp upstream
Tssr94709	transcription start site region 94709	1650 bp upstream
Tssr98570	transcription start site region 98570	786 bp downstream
Tssr98571	transcription start site region 98571	1154 bp downstream