rs49233588 SNP Detail

Summary

• ID
  rs49233588
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GGAGCGCCGG GCAGCCGCAG CCCAGTGTTT CTCCAACCTT
  CGCGCTCCCG GGTTCTCGGT TATTTCAACT CTGGTTTGCT GCAATCGTCG CCCTTTTTAT
  K
  CTGAAATCTA ACAGGACAAT CCGCTCCCGC AGAGCTTAGT ATGATTGTTG TCCTTGTTGT
  TGTCCTGGCG GTTGGCCTAC CACTCTTGGG AGCATGTCTT G                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147693560	ENSMUSSNP3905501	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49233588					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	within coordinates
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	812 bp distal
Rr501589	regulatory region 501589	249 bp distal
Rr501590	regulatory region 501590	within coordinates
Rr501591	regulatory region 501591	1634 bp proximal
Tssr4586	transcription start site region 4586	555 bp downstream
Tssr131170	transcription start site region 131170	966 bp downstream
Tssr131171	transcription start site region 131171	936 bp downstream
Tssr131172	transcription start site region 131172	853 bp downstream
Tssr131173	transcription start site region 131173	803 bp downstream
Tssr131174	transcription start site region 131174	775 bp downstream
Tssr131175	transcription start site region 131175	632 bp downstream
Tssr131176	transcription start site region 131176	591 bp downstream
Tssr131177	transcription start site region 131177	536 bp downstream
Tssr131178	transcription start site region 131178	500 bp downstream
Zfpm2	zinc finger protein, multitype 2	within coordinates