rs49234085 SNP Detail

Summary

• ID
  rs49234085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21424436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTTTTT TTTTTTTTTT
  CCCTGTGTTA TTGTTTGTGG TACTGAACAT TAATAGCCCT GGTCAGATTT CAAGTCGTCT
  TCCAGAAAAA GATAAACTGA TTTAAATTTG TTCGTTGTGG AATGTCTTGC AACATTTTCA
  ACAGTTACTG ACTTTGCACA TTTTTTTGGG GGGCATGTTA GCTAAACTAG TCTGTACAAC
  Y
  GAGGTATAAA CACTTTCACT AGGTACACAT TCAAGGAATA CCTAACCAAA AAAGAAAGTC
  ACCCCCACAA ATTAGATGCC AGCTTTTTTT TGTTTTGTTT TGTTTTGTTT TGTTTTGTTT
  TGTTTTTTTC GAGACAGGGT TTCTCTGTAT AACCCTGGCT GTCTTGGAAC TCACTCTGTA
  GGCCAGGCTG GCCTTGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52314535	NES15371806	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	C	C	C	C	C	C	C	C	C	C
ss137298199	ENSMUSSNP2549766	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49234085					SNP	C	T	T	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314535	NES15371806	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21424436 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	803 bp upstream
Cpgi4477	CpG island 4477	228 bp distal
Gm49586	predicted gene, 49586	89 bp downstream
Rr463712	regulatory region 463712	996 bp distal
Rr463713	regulatory region 463713	752 bp distal
Rr463714	regulatory region 463714	871 bp distal
Rr463715	regulatory region 463715	within coordinates
Rr463716	regulatory region 463716	691 bp distal
Rr463717	regulatory region 463717	203 bp distal
Tssr112932	transcription start site region 112932	656 bp downstream
Tssr112933	transcription start site region 112933	178 bp downstream
Tssr115856	transcription start site region 115856	943 bp upstream
Tssr115857	transcription start site region 115857	917 bp upstream
Tssr115858	transcription start site region 115858	889 bp upstream
Tssr115859	transcription start site region 115859	843 bp upstream
Tssr115860	transcription start site region 115860	818 bp upstream