rs49234318 SNP Detail

Summary

• ID
  rs49234318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151349761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAAGAG AACATCAGAT
  CCCCCAAAAG CAGAGCTAAG CATGTTTGTG CCCAATCATG TGGGTGCTGG GAACAGAATT
  GGTGTCCTCT GCAAGAGCAG GTAATGCTCT TACTACTGAG CCACGTGGCT AGCCCCATGT
  CAGGGAATTC TTATACCCAG TGTTTATGTA CTATCCTGGT CTTCATCTTG GAGAATGTCC
  R
  TCACTCTTTT CCGTGCAGAG AAATCAGCCT GTGGACACAG TCTAGGGACA GGACATGAGC
  AACCTAAAAG CATAAAGGAT TCATGCTCTT CCAAAGAGAA GAGGACATTT TTGATTAAAT
  AGAGAAGTCT TGGCTTTTTA AACTATGCTC CTTGATCTTT CCCCCTGAAC TGATATAGAC
  ACATTTTGTT CCCCCCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144728440	ENSMUSSNP516685	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49234318					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151349761 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	within coordinates
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	within coordinates
Rr117371	regulatory region 117371	640 bp proximal
Tssr54686	transcription start site region 54686	1854 bp downstream
Tssr54687	transcription start site region 54687	1876 bp downstream