rs49234327 SNP Detail

Summary

• ID
  rs49234327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90916838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAA CAAAAAGAGA TAATCAGAAG
  R
  TGACTGTCCT ACGTGCAAAA ACTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147290194	ENSMUSSNP1703547	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323387262	CHEV_10_90543721	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49234327					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90916838 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	1207 bp proximal
Ikbip	IKBKB interacting protein	1964 bp upstream
Rr402144	regulatory region 402144	1878 bp upstream
Rr436975	regulatory region 436975	1191 bp distal
Rr436976	regulatory region 436976	759 bp proximal
Rr436977	regulatory region 436977	1443 bp proximal
Tssr95222	transcription start site region 95222	1115 bp upstream
Tssr98900	transcription start site region 98900	1580 bp downstream
Tssr98901	transcription start site region 98901	1677 bp downstream
Tssr98902	transcription start site region 98902	1707 bp downstream
Tssr98903	transcription start site region 98903	1728 bp downstream
Tssr98904	transcription start site region 98904	1807 bp downstream