rs49235490 SNP Detail

Summary

• ID
  rs49235490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43129852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACATCCCT TTGCTTCTCT
  TCCCAAGTGG AGGAATTATA GCCTCTACAC CTGGCTTTAT GCAGACTGGA GATACACCTG
  ATGTCTTCAG TCATGCTAGG CTGGCAATCT GCCCACTGAG CTACATTCCC ATGGCCCCCT
  GTTGCTTTTT AAAGAGCAAG CTCCAGGCCT TTTACAGTTC TACAGCTAGA AGAAGCTGCC
  R
  GTGGAGCACA GTACCAACCT TTGTCTCTAG ACAGTTTAGG CCAAAGCTGA ATTGGCCGTG
  CAGGCTGCAA AAGCTCTGTC CCCAACTTTA GGGCCAGAAG ACTTCAACTC AGATATGACA
  GGAGGAAGGA GAGCAGAGAA AATAAGGCCA GGAGTTGTGC CGAGTCTTAC CGATGAGCTG
  AACATGCACA CCTTGCCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149008188	ENSMUSSNP2087593	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49235490					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43129852 () rs orientation: forward

Symbol	Name	Function Class
8430432A02Rik	RIKEN cDNA 8430432A02 gene	1896 bp upstream
Cpgi213	CpG island 213	964 bp proximal
Rr410291	regulatory region 410291	1406 bp proximal
Rr410292	regulatory region 410292	1907 bp proximal
Tgfbrap1	transforming growth factor, beta receptor associated protein 1	within coordinates
Tssr11467	transcription start site region 11467	1746 bp downstream