rs49235509 SNP Detail

Summary

• ID
  rs49235509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90823770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGGTCA CTGGTTCTCT
  CCTTCCATAG GAGGTTCTAG GGACTGAGCT CAGCTCACCA GGCTTCTGTG GCAAGCACTT
  TTGCCTGCTG AGTCATCCCA CCAGCCATCT GTATTATTTA AGATTACCTG TGCTTTAAAA
  TAATATCAGT GTATTTTTAA TCTCTAGATG TTGATTTTTG TACAGAAAGA AGCACTTCCT
  R
  CATTTCAACA ACTGTAGCAG CAGTACACCT AGGGTCACTC CTGACTGTCT AGCTGTTCTT
  TATATGGTCA TGTTATCTTG CCACTTTTTG TGCCTGAAAG TTTCATGGTC ACAGATATCA
  TGCATTTTAC CTGTCTGGGT ATTTCTGTAT TTGGCTACAT CTTGAGCTTT GCCACAGTAA
  GGTATGTGGA AACAGACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908344	NES15947384	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49235509					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908344	NES15947384	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90823770 () rs orientation: forward

Symbol	Name	Function Class
D6Mit229	DNA segment, Chr 6, Massachusetts Institute of Technology 229	212 bp distal
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rpl21-ps12	ribosomal protein L21, pseudogene 12	1328 bp upstream