rs49236392 SNP Detail

Summary

• ID
  rs49236392
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141263080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATTTAGC CTCCACGGTT
  TTTTGTTGTT GTTGTCCTTT TAATCCAAAT ACCTACTGCA AAAGCCTAAC CACTGTTAAA
  AGAACATTCG TCTTTGAAGC ATTTTATGTA ATGTATTCCC AGTGTACACC TCTTAATCCT
  GTAGAACAGT TATTAGTTAA TGTTGTAATC AGCTAGGGAA AAGGGTAGGA AAAGGCACTC
  C
  GGTTCGGTTT AACATAGGCA TCTCGGAGTT CTTCTGTTTC TGAGGTCTAC AGGGCAGAGT
  CTGAACGCCA TTAAGTTTCC TTGTCATCTT AGTGCCTTTC CATCCCTTTC GTTTAAATGA
  TTCAAATTCT CTTTTTCCTT CCTGGCGGCG ATCACAACAA AACACATTCC ACTATATGGA
  GAAAGAGATC TATACTTAGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321387933	CHEV_4_141091684	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49236392					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141263080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15233	CpG island 15233	396 bp proximal
Cpgi15234	CpG island 15234	1650 bp proximal
Gm4123	predicted gene 4123	within coordinates
Rr1207	regulatory region 1207	992 bp proximal
Rr603787	regulatory region 603787	354 bp distal
Rr603788	regulatory region 603788	1015 bp proximal
Spen	spen family transcription repressor	within coordinates