rs49236625 SNP Detail

Summary

• ID
  rs49236625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69691278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT GGGGGACATT TAAACCACAT
  Y
  AAGGAAAAGG AAGAGGGGAC AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132361400	ENSMUSSNP1322265	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49236625					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69691278 () rs orientation: forward

Symbol	Name	Function Class
6720407P12Rik	RIKEN cDNA 6720407P12 gene	1674 bp downstream
Cpgi3148	CpG island 3148	within coordinates
Fgf11	fibroblast growth factor 11	within coordinates
Rr450111	regulatory region 450111	1254 bp proximal
Tssr102534	transcription start site region 102534	322 bp upstream
Tssr108840	transcription start site region 108840	486 bp upstream