rs49238367 SNP Detail

Summary

• ID
  rs49238367
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117430722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCAAAC GCCCTTGCCT
  GGGACCTGAA GGGCCAGTTG TTTGACCTCA GTGAAGAGTT GAAACGCTAT CGGGAGAAGA
  CTCAAACGCT GGAACGGGAG AACCGGGGGC TTCGGAAACA TCTCAGAGAG GTCCAGGAGC
  AGGCCACGAC CCTGGGGACA GAGCAGAGCA CCCTGGAAGG GGAGCTGGCC AATGTACGCA
  S
  CCGAGCTGAG CAGGACCAGC AGAGACTGGA GATGCTGAGT GCCTGTGTCT TGGAGCTGGA
  GGAATATCTG GGTACCACGG AAAGGTTGGT TCAGGAGCTT CAGAGAGAGC GGCTGCAATT
  GAAGGAGGAG TGGAGCACAT TGAGCATCCA ACTGGAGGAG CAGGAGAGGA GGTTTCAGGT
  CGCAGAAGCA GCTCTGTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61320215	NES16929028	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49238367					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61320215	NES16929028	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117430722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2233	CpG island 2233	499 bp distal
Gm63651	predicted gene, 63651	within coordinates
Kifc5c-ps	kinesin family member C5C, pseudogene	within coordinates
Rr402265	regulatory region 402265	1004 bp upstream
Rr439564	regulatory region 439564	867 bp proximal