rs49238697 SNP Detail

Summary

• ID
  rs49238697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:55131113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATGAAA TAACATAGAG
  TATTTATTGC AGTCTAAATA TATGCTTTGC TAAATGTTTT CTATGGAAGG TTTACAACAA
  TTCCATTATA AGTACTCATA AAATTCCCAG TTTATGGGCA AGGGCCAAGA GCACAAGGTC
  ATGGTATGCA CTTAATGGGG AAGAAAAATC TAGAATAAGA CTTGTTCCTG GAGAGCAAAA
  Y
  ACGTTTTAAA TTTTTAAATT TATGTTTTAG AGACAGGGTC TTACTGACCC TACACTGTCT
  ATAAACTCAT CCCTCCTGCC TCAGCCTCCT GACAGCTGGG ATTATAGGGG TGGGTCGCTA
  CCTACCCACA ATGCTGCTGT TTCTGATCCC TGGCTCCTCC TCCCCACCCT CTGGAGTCTG
  AATTTTATAG GGAAGAGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63515149	NES17007405	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49238697					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63515149	NES17007405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:55131113 () rs orientation: forward

Symbol	Name	Function Class
D15Mit26	DNA segment, Chr 15, Massachusetts Institute of Technology 26	838 bp proximal
D15Mit26.1	DNA segment, Chr 15, Massachusetts Institute of Technology 26.1	927 bp proximal
Rr303058	regulatory region 303058	313 bp distal
Rr303059	regulatory region 303059	888 bp proximal