rs49238908 SNP Detail

Summary

• ID
  rs49238908
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29979291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCA CTCACTGAAC AGTAAAGTGA
  K
  ATTAGAGATG ATTTGTAAAT GCAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322132938	CHEV_7_31064885	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49238908					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29979291 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	1167 bp upstream
Cpgi18786	CpG island 18786	within coordinates
Rr400235	regulatory region 400235	400 bp upstream
Rr644765	regulatory region 644765	within coordinates
Rr644766	regulatory region 644766	177 bp proximal
Rr644767	regulatory region 644767	543 bp proximal
Rr644768	regulatory region 644768	1032 bp proximal
Rr644769	regulatory region 644769	1979 bp proximal
Tssr65667	transcription start site region 65667	221 bp upstream
Tssr65668	transcription start site region 65668	320 bp upstream
Tssr65669	transcription start site region 65669	668 bp upstream
Tssr71721	transcription start site region 71721	469 bp downstream
Wdr62	WD repeat domain 62	within coordinates