rs49238919 SNP Detail

Summary

• ID
  rs49238919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118087692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG AAGTTCAGAA CTGAGAAGGG
  Y
  AAAGACTGTA AGCCAGCTCC CTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145780840	ENSMUSSNP1388598	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49238919					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118087692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19620	CpG island 19620	1266 bp proximal
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	911 bp downstream
Rr654485	regulatory region 654485	within coordinates
Rr654486	regulatory region 654486	53 bp proximal
Tssr74439	transcription start site region 74439	903 bp upstream
Tssr74440	transcription start site region 74440	181 bp upstream