rs49239982 SNP Detail

Summary

• ID
  rs49239982
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60058739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTGGATG GAGGAAAGGC
  TGTGTGCTAC TCGGATGAGA TCTCAGAGGT ATGAAATCAA GAAGTCTCAC AGAATGAGAC
  AGTTTAGGAA GATGCCAAGT TCTCTCAAGA GCATGTGCCC AAAGTCCGGG ATGTGTGGGG
  TAAGAGATGA TTGAAAGTTT ACCTAGACAG TGAAAGAAAT GCCTGCCAGT GCTAGGAGCC
  K
  TGGACCTGAA ACTGAAGTAT GGTTTCCTCA GAAGGATTCA TGAAGTTTAA TCATATGTTT
  TAAAAAAATG TAGAAGGATT TAGAGAAATA GTAGAAAACG ATGAAATTGA GGAAAAAACA
  AGTAGACTTA GAGAGATACC AAAAAAAAAA AAATGTGTAT AATACTGGGT TATTGGAATT
  GGGAGGGTAC TCACCATTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52560001	NES15632513	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49239982					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52560001	NES15632513	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60058739 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	within coordinates
Rr502965	regulatory region 502965	478 bp proximal
Tssr4605	transcription start site region 4605	314 bp downstream
Tssr134460	transcription start site region 134460	within coordinates
Tssr134461	transcription start site region 134461	137 bp downstream
Tssr134462	transcription start site region 134462	224 bp downstream
Tssr134463	transcription start site region 134463	284 bp downstream
Tssr134464	transcription start site region 134464	378 bp downstream
Tssr134465	transcription start site region 134465	432 bp downstream
Tssr134466	transcription start site region 134466	445 bp downstream
Tssr134467	transcription start site region 134467	481 bp downstream
Tssr134468	transcription start site region 134468	508 bp downstream
Tssr134469	transcription start site region 134469	539 bp downstream