rs49240013 SNP Detail

Summary

• ID
  rs49240013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84408590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGGCAAC GCTAAACAGT
  TTCCACTCTT GAGGATTCCT TGCTGAGGCA TCCGACTTCC TCCTTTCTCC ACTCACCTCA
  CGGCTCCACT CGGCGCACTC AGGACCTCCC GCAGTCCTCC CCACAGTCAT CTTCCTAACT
  AGAGAGAGAG AGAAGCAGAG GTGAAAGCAG CAGTGACAAC CGTGACAGCG GCGCCGGCGG
  Y
  TAGGTACTGC TAGCCACGCC CCTTCATGGC TTTAGCCTTG GATTGGCTTC CAGTCTTTAG
  TCTGTTCCGC CCAATGAGGC AAGAGCGTCT TCTGATTGGA TAATTTTCTT CAACTATTTT
  ATTTCCGGTT TTGAAGACAG GGCTAAAACC ACACAAGGTT GACGACTGCC CCGGAAGCAC
  TTTCCAGGAC CTATCAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61661749	NES17608491	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49240013					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61661749	NES17608491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84408590 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq6	coenzyme Q6 monooxygenase			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi4867	CpG island 4867			within coordinates
Fam161b	family with sequence similarity 161, member B			mRNA-UTR
				Noncoding-Transcript-Variant
Rr403407	regulatory region 403407			within coordinates
Rr469628	regulatory region 469628			149 bp distal
Rr469629	regulatory region 469629			402 bp distal
Rr469630	regulatory region 469630			within coordinates
Tssr114338	transcription start site region 114338			173 bp downstream
Tssr114339	transcription start site region 114339			185 bp upstream
Tssr114340	transcription start site region 114340			213 bp upstream
Tssr116998	transcription start site region 116998			19 bp upstream
Tssr116999	transcription start site region 116999			within coordinates