rs49240314 SNP Detail

Summary

• ID
  rs49240314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:65074307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTATAAT CTAATGGTTT
  TTAGCAAGGC AGAAGGGCAA GGCCTACTAG AGCCATGATT GCCATCCTCA GGCCTGCTAG
  AGCTCCTTCA AAATCACTAT CAGCTTCGAT TGGTGTGTGT AATGCTCGGG AGCTTAGAGT
  ATATCTGGAA GGGAAACAGG AGCTGTTTTC AAGGATTCAC TTCCATTTGT GCATGACGAC
  R
  ACAATGATGA CACTCTTCTC CATTCAGCTA TGGTGAGTAA GATCTCCCAG ACATGACATC
  ACTGGGTGTT GTCCCTAATG GGATTTATGA ATGGCTTTCA CTCACCAGGA GCTTTTTACC
  TCTTAGATGC AGATGATGCC CCGCTCCCTA GTCTCACAGT AGCCATGAAG CAGGTCAGCC
  CTGTATGACG ATGGAGCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62845421	NES17373212	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49240314					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62845421	NES17373212	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:65074307 () rs orientation: forward

Symbol	Name	Function Class
Dreh	down-regulated in hepatocellular carcinoma	within coordinates
Rr529706	regulatory region 529706	1603 bp distal