rs49240376 SNP Detail

Summary

• ID
  rs49240376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17102593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAACATAC CCGAATTGGA ACAATTATCC ATAGGTTCCA
  GAGAAACAGG GCTACCAGAG ACTCAGTTAT CAGGCACCCC AGACACATGT CAGTCTGAGT
  Y
  TTTAAATGAT GTCAAAGTTC ATTCTGCAGA GAGAATGTCT TCGTCTTCCA ACCACGAGAG
  TGCATCTCTT GAAAACCCTG CACAAGACCA GAGTTGGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146100388	ENSMUSSNP5612019	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49240376					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17102593 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Tssr155419	transcription start site region 155419	389 bp upstream
Tssr158489	transcription start site region 158489	199 bp downstream
Tssr158490	transcription start site region 158490	292 bp downstream
Tssr158491	transcription start site region 158491	355 bp downstream