rs49240787 SNP Detail

Summary

• ID
  rs49240787
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30324360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCAAGCAT AAGGCATGGG CACAGAGTCT GTTTTCTGAC
  ATTACAATCC CTGTCTAAAG CAGCTGCCCG ACATCTCCCA GCCCGTCTAT GCTCCACTGC
  M
  CAGGCTTCCT TACTGAAGGG GAGGCTCAAA CACAAGGGTA GACAGAAGAA AACAGGCCAG
  TCCGGCAGAG GCACAAAGTC CGGATTTTAT TGTTATCCTG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61133385	NES16636990	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49240787					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61133385	NES16636990	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30324360 () rs orientation: forward

Symbol	Name	Function Class
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Garem2	GRB2 associated regulator of MAPK1 subtype 2	982 bp downstream
Hadha	hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha	61 bp downstream
Rr112564	regulatory region 112564	760 bp distal
Rr122057	regulatory region 122057	1623 bp proximal
Rr128721	regulatory region 128721	641 bp proximal
Tssr50477	transcription start site region 50477	432 bp downstream
Tssr50478	transcription start site region 50478	863 bp downstream
Tssr50479	transcription start site region 50479	1409 bp downstream