rs49240853 SNP Detail

Summary

• ID
  rs49240853
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT CTCTCAACAG AAAGGTTCTC
  G
  CAGTCGGCGG AAGACCCTTC TAGTA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148223092	ENSMUSSNP3431035	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss320605472	CHEV_2_164159046	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49240853					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175230 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	19 bp upstream
Tssr745	transcription start site region 745	62 bp upstream
Tssr746	transcription start site region 746	73 bp upstream
Tssr747	transcription start site region 747	86 bp downstream
Tssr748	transcription start site region 748	107 bp upstream
Tssr749	transcription start site region 749	139 bp upstream
Tssr750	transcription start site region 750	152 bp upstream
Tssr751	transcription start site region 751	206 bp upstream
Tssr752	transcription start site region 752	275 bp upstream
Tssr753	transcription start site region 753	282 bp upstream
Tssr754	transcription start site region 754	954 bp upstream
Tssr21562	transcription start site region 21562	574 bp downstream
Tssr21563	transcription start site region 21563	565 bp downstream
Tssr21564	transcription start site region 21564	534 bp downstream
Tssr21565	transcription start site region 21565	521 bp downstream
Tssr21566	transcription start site region 21566	510 bp downstream
Tssr21567	transcription start site region 21567	498 bp downstream
Tssr21568	transcription start site region 21568	489 bp downstream
Tssr21569	transcription start site region 21569	within coordinates
Tssr21570	transcription start site region 21570	47 bp upstream
Tssr21571	transcription start site region 21571	78 bp upstream
Tssr21572	transcription start site region 21572	95 bp upstream
Tssr21573	transcription start site region 21573	124 bp upstream
Tssr21574	transcription start site region 21574	188 bp upstream
Tssr21575	transcription start site region 21575	966 bp upstream
Tssr21576	transcription start site region 21576	982 bp upstream
Tssr21577	transcription start site region 21577	1001 bp upstream
Tssr27433	transcription start site region 27433	43 bp downstream
Tssr27434	transcription start site region 27434	66 bp downstream
Tssr27435	transcription start site region 27435	94 bp downstream
Tssr27436	transcription start site region 27436	113 bp downstream
Tssr27437	transcription start site region 27437	134 bp downstream
Tssr27438	transcription start site region 27438	164 bp downstream
Tssr27439	transcription start site region 27439	178 bp downstream
Tssr27440	transcription start site region 27440	188 bp downstream
Tssr27441	transcription start site region 27441	243 bp downstream
Tssr27442	transcription start site region 27442	251 bp downstream
Tssr27443	transcription start site region 27443	314 bp downstream
Tssr27444	transcription start site region 27444	323 bp downstream
Tssr27445	transcription start site region 27445	939 bp downstream
Tssr27446	transcription start site region 27446	983 bp downstream
Tssr27447	transcription start site region 27447	1078 bp downstream
Tssr27448	transcription start site region 27448	1692 bp downstream