rs49240902 SNP Detail

Summary

• ID
  rs49240902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191476836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATAATGG GCAGTTTCAG
  AGTGAATATG GAATTTGGGG AACAGTAAAA CTCAGAAAAA GAGTTATCCA TCCAAGGGGT
  CTGAAGAGAT GGCTGTCGGT GAAGTGCCTA CTGAGCAGGT ATGAGGATTG GAGTTCATGG
  GGGACCTAAG CTGAAGTATA AAGACTTTAG CTCCCATTTA AAGCTGGGTA TGAGCTGGGC
  R
  TGGTGGCGCA CACCTTTAAT CCCAGCACTT GGGAGGCAGA GGCAGGTGGA TTTCTGAGTT
  CGAGGACAGC CAGGGCTACA CAGAGAAACC CTGTCTCGAA AAAACAAAAA CAAAAAAAAC
  CAAAACAAAA CAAAAAATGG GTATGGCTGC ATGCATCTGG TAGCTCATCT GGGGAGGAGA
  AAACAGGCCT ACTAAACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146510374	ENSMUSSNP730761	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49240902					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191476836 () rs orientation: forward

Symbol	Name	Function Class
Lpgat1	lysophosphatidylglycerol acyltransferase 1	within coordinates
Tssr10784	transcription start site region 10784	1584 bp downstream