rs49241030 SNP Detail

Summary

• ID
  rs49241030
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85273594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA GCTTCTGCTC TTTGCCTGTT
  K
  CTCTTGCCTT GCTAGCAAGC CCATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144799165	ENSMUSSNP148724	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss324460046	CHEV_13_85265080	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49241030					SNP	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85273594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	1224 bp proximal
Gm4076	predicted gene 4076	1075 bp downstream
Rr388812	regulatory region 388812	1538 bp upstream
Rr483356	regulatory region 483356	1791 bp distal
Rr483357	regulatory region 483357	1038 bp proximal
Tssr4134	transcription start site region 4134	1373 bp upstream
Tssr120547	transcription start site region 120547	1089 bp upstream
Tssr120548	transcription start site region 120548	1215 bp upstream
Tssr120549	transcription start site region 120549	1260 bp upstream
Tssr123349	transcription start site region 123349	1155 bp downstream
Tssr123350	transcription start site region 123350	1511 bp downstream
Tssr123351	transcription start site region 123351	1612 bp downstream
Tssr123352	transcription start site region 123352	1918 bp downstream