rs49241273 SNP Detail

Summary

• ID
  rs49241273
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:9735678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTAATTA ATTAATTAAA
  AAAAGAAATA ATCTACAGAG TGAATTCCCA GGTGTCTTCT CTTGTACAGC ACCATTCCCC
  CCGGGGCCAG CCATGATGCT CTTTAAGTGG TACAACGGTA AAGAATTAAA CAGCATCCAA
  TTACATGGTC AGAGAGTTAT TCTACTTCAA GTCCTTGCAG CTTCAACCAG AAAGTCCCAA
  M
  CCCCTACAAC ATCTTGCTTA TCTCCTTTTT TGAGCAAGAG CTTAGGCATG TGGCTCAAAG
  CCTCTGACAG GAGCTGAAGA CAGAAGGGAA AATCCTATCT GGTCTCTTTT ACCTGTGTTA
  ATTTTGCACT TACTTTCTAT TTGTGGGAAG TGATACTGAT TTTTCATATC TGACTCTGAT
  GCCAAGTTAT TTCTCTAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147842235	ENSMUSSNP2853160	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49241273					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:9735678 () rs orientation: forward

Symbol	Name	Function Class
D16Mit183	DNA segment, Chr 16, Massachusetts Institute of Technology 183	1156 bp distal
Grin2a	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	within coordinates
Tssr139889	transcription start site region 139889	1941 bp downstream
Tssr139890	transcription start site region 139890	1984 bp downstream