rs49241319 SNP Detail

Summary

• ID
  rs49241319
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128784653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTATACT CCCAGATACT
  CAGAATCAAA AGTTCAAAGC CTATGTAGGC TACAAAGTGA GTTCAAGTCC ATCCTGGACC
  ATCTAGTGAG ACATTATCTT ATAGTAAAGA GCTAAAAGAA GCCAAGGGTT GTAGCTCAGT
  GGCTGAGTGA CCATGCATCA GGCCCTGAGT TAAGTTTCCT GTATACACTA CAGAAGACAA
  K
  TCTTCCTTAA GCTTATGTCC TGGGTGGTGG GTGACTTCCA TAAAGATGCC CCCCCTCTTT
  TGCCCCTGAA AGTAGACTGG GTGGGTGCCC CTTTGATGGA TTCCCAGGCA TGCTGTGACC
  TTCTGTTTTG TGTGATGGCT CAGTAGGCAT TTGATAACTC ATTGTTCCCG TTGGCTTTGA
  AATGCTAAGG ACAAAGAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60795379	NES16468466	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49241319					SNP	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795379	NES16468466	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128784653 () rs orientation: forward

Symbol	Name	Function Class
Rr372000	regulatory region 372000	1379 bp downstream
Rr417836	regulatory region 417836	133 bp proximal