rs49241717 SNP Detail

Summary

• ID
  rs49241717
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:35389626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGCCAGTG TTAGAGAGCT GGCCATCCCC CTTCTATTCT
  AAGCTTCTAA GGAATTGTGT TTCTTATGAA ATTCAAATCC ATAGCTACTT CTGAGTGCTT
  W
  CTGTATTTAT GGCACTTGAA GGTGTTTTTA TAAATAAGCC TAAGATACAT GGAACACTTG
  AGTCCCAGCG TTTGAAAAGA GTGCTGTTTC TAACAGGATG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60386832	NES15880804	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49241717					SNP	A	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386832	NES15880804	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:35389626 () rs orientation: forward

Symbol	Name	Function Class
Gm38512	predicted gene, 38512	1777 bp downstream
Rr67159	regulatory region 67159	626 bp distal
Rr67160	regulatory region 67160	1375 bp proximal