rs49241815 SNP Detail

Summary

• ID
  rs49241815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:39110640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATATATAG AGACATTCCA
  TAAGTTCTGT GACTCTAGAG AACCCTGACT AATGCACAGG ATAACTATGC CTGCTATAGA
  GAAGTACTAC GTAGAAGGTA GAAGTGACCC ACTGAATTAG TTTAGTATGA ATGAAAAATC
  CTTTTAAGTT GGACAGTTCC AGAGAATCTT AGGATGATTC TGGGTTTACC TTTCTGTAAG
  R
  AGACATTATA TGTTTATGGC TTTATGGGCC TTAAGATTTT CTCCTCAAGA ACTTCTGCTT
  GCCTGGGAGG CATGGAAGTA CCCATGGCAG CGGGTTGGAC AAGCCAGTCT GACATGGCCC
  AATAAAACTT TATTTAAACA CAGACTGTAG GTGCCTGGTC CTTGATGATG GAAACTCCTT
  TGGAGGGATT CCTATGTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61141298	NES16648238	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49241815					SNP	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61141298	NES16648238	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:39110640 () rs orientation: forward

Symbol	Name	Function Class
Gm71877	predicted gene, 71877	within coordinates
Gm71888	predicted gene, 71888	within coordinates
Gm71905	predicted gene, 71905	552 bp upstream