rs49242707 SNP Detail

Summary

• ID
  rs49242707
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14068885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCTCAT GCTGCTTCCA
  TTACAAATAT GAGCCTACAA AAACTGGACT GAGCAGTTCA TAACCCTCAT TCAGCAACTG
  AAACATGCAA CACTAAAATC CTTTTTGACT GCGCAACTTA TATCAGCATT TCATAATTTC
  TGCTTAATGC ACTTCAGTGT GGATATGAAA TGACAAAAGT TCTGTTTCTT CTCTATTTTT
  W
  TCCTTGGTTC CTATTCTTTG GATCTCATCT AAGGCTGCCT GGCCTGCAAA TGTGGTCGGG
  AGAGGATGTG ATAGATCAGT ACTTGATACT GAGTTGCATG GTGTCCAAGC CAGTGACTAC
  AAGTATCAGG GTGGCTGTGG GTAACCATGG ATACCTGTGT GTGTGCTACG CAGATTACCA
  GATAATGCAT AATCTACAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60543068	NES16555065	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49242707					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543068	NES16555065	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14068885 () rs orientation: forward

Symbol	Name	Function Class
Afdn	afadin, adherens junction formation factor	within coordinates
Rr522441	regulatory region 522441	1715 bp proximal
Tssr142719	transcription start site region 142719	1857 bp downstream
Tssr142720	transcription start site region 142720	1427 bp upstream