rs49243464 SNP Detail

Summary

• ID
  rs49243464
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48406701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTACCCA CGAACAGAGT
  GCGGTCGGCC TCTGCGGCCG CCGCCCCCAT CTCCGCGCTG TTCCAGTCCC AGGCCTAGGC
  TGCCTGCTCA GGGCCGACCG ACCCTACTGC GCACCCTCAG AAACACTCAC GTCCTCCCGT
  TCAGACGTCA CGACGTAAAG GCCCGCCGTG CGCGAGCGCA GACGAGCTAC GCACGCGCGC
  K
  GGACAAGCGC CCGTTTCCGG CGGCTGCTCC TTCCGCCGTT GCGTGAAAAA TGGCTACTGG
  GGTTGGTAAC GGTTGCGTCT GACGCGGGCT GGAGTGACCT GCGGCGCCGC CGAGGGCCCA
  GTTTGATCGA CATACGTCTA GCAAACACTG CAGGCGGTGT TTGAAGATGG CCCAGAACTC
  GGTGTCGCTG TCCGCCGGCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61394055	NES16775929	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49243464					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394055	NES16775929	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48406701 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	578 bp downstream
Cpgi21716	CpG island 21716	within coordinates
Gm5617	predicted gene 5617	41 bp upstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	102 bp upstream
Rr195326	regulatory region 195326	1300 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	within coordinates
Tssr2862	transcription start site region 2862	471 bp downstream
Tssr84988	transcription start site region 84988	344 bp downstream
Tssr84989	transcription start site region 84989	286 bp downstream
Tssr84990	transcription start site region 84990	181 bp downstream
Tssr84991	transcription start site region 84991	135 bp downstream
Tssr84992	transcription start site region 84992	1 bp downstream
Tssr84993	transcription start site region 84993	5 bp upstream
Tssr84994	transcription start site region 84994	502 bp upstream
Tssr89390	transcription start site region 89390	993 bp upstream
Tssr89391	transcription start site region 89391	974 bp upstream
Tssr89392	transcription start site region 89392	944 bp upstream
Tssr89393	transcription start site region 89393	412 bp upstream
Tssr89394	transcription start site region 89394	128 bp upstream
Tssr89395	transcription start site region 89395	83 bp upstream
Tssr89396	transcription start site region 89396	66 bp upstream