rs49243709 SNP Detail

Summary

• ID
  rs49243709
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106106320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTTCTGTG TCTACAACAA GCACATAATC AAAGCCAAGT
  TCTTCTGTAC ATGTCTCTTC CACTTTCAGG AACTGCATGT AGGCACCCTT GGTACACCTG
  C
  CTGCACTGAC TGTGAACTGT AGACCAAACA GAGTATTCAG CAGGGTAGAC TTCCCTGAGC
  TCTGCAGGCC AAGGACAGAG AGAACAAACA GCCTTTTGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145614883	ENSMUSSNP2209055	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322371926	CHEV_7_113650627	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49243709					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106106320 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74131	transcription start site region 74131	1898 bp upstream
Tssr74132	transcription start site region 74132	1722 bp upstream
Tssr74133	transcription start site region 74133	1065 bp upstream
Tssr74134	transcription start site region 74134	810 bp upstream
Tssr74135	transcription start site region 74135	730 bp upstream
Tssr74136	transcription start site region 74136	684 bp upstream
Tssr74137	transcription start site region 74137	618 bp upstream
Tssr74138	transcription start site region 74138	580 bp upstream
Tssr74139	transcription start site region 74139	538 bp upstream
Tssr74140	transcription start site region 74140	485 bp upstream
Tssr74141	transcription start site region 74141	95 bp upstream
Tssr74142	transcription start site region 74142	33 bp downstream