rs49250010 SNP Detail

Summary

• ID
  rs49250010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89719603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATTGCTT AAGAGCAGTG
  GGTGAACTAG GTGGCTTCGA ATGTGACAAT GTATGCTTCC TGCTGCTAGA GTAACTCAAT
  TCTAAATCCT GGTGTCTACA TTGTTTCTTC TTAGTTGCTA AGGCGACTCA AGAAAGGCAA
  AGAGGGGATC AGGGACCCAC AAATATAAGA TTATGAAGGA AAAGAAAAGG ACCAGGGAAC
  R
  CTTCAAGATT AGAAGCTAGT TTCCTGCCAG AGCTTCGCTT CATTTCATAT AACTCGCCCA
  CACTCTCTCC AGTTTCCAAA GACCAACTGC AGGCTCTTCT CCTGTGTCAG CCTCCAGTTC
  TTGGTGCTGA ATAAAAAGAA CTAAAAGAAG GGCGATAAGG ACCAGGGGGT AGCTAGGAGC
  ACCCAGCCGA GCAGTCAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145292141	ENSMUSSNP5343310	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49250010					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89719603 () rs orientation: forward

Symbol	Name	Function Class
Tssr2327	transcription start site region 2327	1265 bp upstream