rs49251253 SNP Detail

Summary

• ID
  rs49251253
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35965533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGTTGGC CTCTGGGTTA CTCTGTAGTC CTGGTAAGCA
  CTATAGGTGC CTCCCCTTCA TCCTGGCAGG AGCTGGATTC TCTAGGAGAA GCACTTAGCT
  W
  AAGGGGCTGC AGAAGCTAGG CCCTTGGCTA GCTGGCTTGT TAGTGCCTTA TTTATGTGTG
  TGTTTGGGCC CGGTTTCCCA GCTCAGCAGG TAACCCTGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146947005	ENSMUSSNP4226423	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325584018	CHEV_18_35992134	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49251253					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35965533 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	1284 bp distal
Cpgi9845	CpG island 9845	985 bp distal
Cpgi9846	CpG island 9846	174 bp distal
Cxxc5	CXXC finger 5	within coordinates
Gm29417	predicted gene 29417	1387 bp upstream
Gm50371	predicted gene, 50371	within coordinates
Rr352723	regulatory region 352723	within coordinates
Rr370361	regulatory region 370361	104 bp downstream
Tssr150576	transcription start site region 150576	1507 bp downstream